Country: United States

Found 17049 papers in total
Mate-choice copying as Bayesian decision making
Mate-choice copying as Bayesian decision making
2005,
Mate-choice copying by females has been reported in fishes (e.g., guppies) and lekking...
On a new collection of stochastic linear programming test problems
On a new collection of stochastic linear programming test problems
2004,
The purpose of this paper is to introduce a new test-problem collection for stochastic...
Three-stage prediction of protein β-sheets by neural networks, alignments and graph algorithms
Three-stage prediction of protein β-sheets by neural networks, alignments and graph algorithms
2005,
Motivation: Protein β-sheets play a fundamental role in protein structure,...
Opportunities for combinatorial optimization in computational biology
Opportunities for combinatorial optimization in computational biology
2004,
This is a survey designed for mathematical programming people who do not know...
DNA sequencing – tabu and scatter search combined
DNA sequencing – tabu and scatter search combined
2004,
In this paper, a tabu-search algorithm enhanced by scatter search is presented. The...
Palindromes in SARS and other coronaviruses
Palindromes in SARS and other coronaviruses
2004,
With the identification of a novel coronavirus associated with the severe acute...
Haplotyping populations by pure parsimony: Complexity of exact and approximation algorithms
Haplotyping populations by pure parsimony: Complexity of exact and approximation algorithms
2004,
In this paper we address the pure parsimony haplotyping problem: Find a minimum number...
Computational problems in noisy SNP and haplotype analysis: Block scores, block identification, and population stratification
Computational problems in noisy SNP and haplotype analysis: Block scores, block identification, and population stratification
2004,
The study of haplotypes and their diversity in a population is central to...
Global optimization of Morse clusters by potential energy transformations
Global optimization of Morse clusters by potential energy transformations
2004,
The Morse potential is a simple model for the potential energy of atoms with a single...
A semidefinite programming approach to side chain positioning with new rounding strategies
A semidefinite programming approach to side chain positioning with new rounding strategies
2004,
Side chain positioning is an important subproblem of the general...
Protein threading: From mathematical models to parallel implementations
Protein threading: From mathematical models to parallel implementations
2004,
This paper presents a new network-flow formulation for the problem of predicting 3D...
Optimizing an empirical scoring function for transmembrane protein structure determination
Optimizing an empirical scoring function for transmembrane protein structure determination
2004,
We examine the problem of transmembrane protein structure determination. Like many...
Optimal solutions for the closest-string problem via integer programming
Optimal solutions for the closest-string problem via integer programming
2004,
In this paper we study the closest-string problem (CSP), which can be defined as...
Tour merging via branch-decomposition
Tour merging via branch-decomposition
2003,
Robertson and Seymour introduced branch-width as a new connectivity invariant of...
Dynamic programming based approximation algorithms for sequence alignment with constraints
Dynamic programming based approximation algorithms for sequence alignment with constraints
2004,
Given two sequences X and Y , the classical dynamic programming solution to the local...
The fine structure of galls in phylogenetic networks
The fine structure of galls in phylogenetic networks
2004,
A phylogenetic network is a generalization of a phylogenetic tree, allowing properties...
The Pht/Pht/∞ queueing system: Part I – The single node
The Pht/Pht/∞ queueing system: Part I – The single node
2004,
We develop a numerically exact method for evaluating the time-dependent mean,...
The [Pht/Pht/∞]K queueing system: Part II – The multiclass network
The [Pht/Pht/∞]K queueing system: Part II – The multiclass network
2004,
We demonstrate a numerically exact method for evaluating the time-dependent mean,...
A two-moment approximation for the GI/G/c queue with finite capacity
A two-moment approximation for the GI/G/c queue with finite capacity
2005,
In this paper, we consider the steady-state queue length of the multiserver...
Using extra dual cuts to accelerate column generation
Using extra dual cuts to accelerate column generation
2005,
Column generation is often used to solve models with stronger linear-programming...
An automated multiresolution procedure for modeling complex arrival processes
An automated multiresolution procedure for modeling complex arrival processes
2006,
To automate the multiresolution procedure of Kuhl et al. for modeling and simulating...
Theory for designing nature reserves for single species
Theory for designing nature reserves for single species
2005,
We examine the question of the optimal number of reserves that should be established...
Reserve selection using nonlinear species distribution models
Reserve selection using nonlinear species distribution models
2005,
Reserve design is concerned with optimal selection of sites for new conservation...
Introduction to Rare Event Simulation
Introduction to Rare Event Simulation
2006,
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