A Cubic‐Vertex Kernel for Flip Consensus Tree

A Cubic‐Vertex Kernel for Flip Consensus Tree

0.00 Avg rating0 Votes
Article ID: iaor2014323
Volume: 68
Issue: 1
Start Page Number: 81
End Page Number: 108
Publication Date: Jan 2014
Journal: Algorithmica
Authors: ,
Keywords: trees
Abstract:

Given a bipartite graph G=(V c ,V t ,E) and a nonnegative integer k, the NP‐complete Minimum‐Flip Consensus Tree problem asks whether G can be transformed, using up to k edge insertions and deletions, into a graph that does not contain an induced P 5 with its first vertex in V t (a so‐called M‐graph or ‐graph). This problem plays an important role in computational phylogenetics, V c standing for the characters and V t standing for taxa. Chen et al. (2006). showed that Minimum‐Flip Consensus Tree is NP‐complete and presented a parameterized algorithm with running time O(6 k ⋅|V t |⋅|V c |). Subsequently, Böcker et al. (2012) presented a refined search tree algorithm with running time O(4.42 k (|V t |+|V c |)+|V t |⋅|V c |). We continue the study of Minimum‐Flip Consensus Tree parameterized by k. Our main contribution are polynomial‐time executable data reduction rules yielding a problem kernel with O(k 3) vertices. In addition, we present an improved search tree algorithm with running time O(3.68 k ⋅|V c |2|V t |).

Reviews

Required fields are marked *. Your email address will not be published.