Article ID: | iaor20117840 |
Volume: | 23 |
Issue: | 3 |
Start Page Number: | 331 |
End Page Number: | 345 |
Publication Date: | Jun 2011 |
Journal: | INFORMS Journal on Computing |
Authors: | Laguna Manuel, Samorani Michele, DeLisle Robert Kirk, Weaver Daniel C |
Keywords: | classification, drugs, pharmaceutical industry |
Drug discovery is the process of designing compounds that have desirable properties, such as activity and nontoxicity. Molecule classification techniques are used along with this process to predict the properties of the compounds to expedite their testing. Ideally, the classification rules found should be accurate and reveal novel chemical properties, but current molecule representation techniques lead to less‐than‐adequate accuracy and knowledge discovery. This work extends the propositionalization approach recently proposed for multirelational data mining in two ways: it generates expressive attributes exhaustively, and it uses randomization to sample a limited set of complex (‘deep’) attributes. Our experimental tests show that the procedure is able to generate meaningful and interpretable attributes from molecular structural data, and that these features are effective for classification purposes.